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scrna-orchestrator
by ClawBio361
Updated 3/13/2026Local Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optional CellTypist annotation, and optional two-group differential expression from raw-count .h5ad or 10x Matrix Market input.
scrnasingle-cellscanpyclusteringdifferential-expressionh5admtx10x
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What this skill helps you do
Local Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optional CellTypist annotation, and optional two-group differential expression from raw-count .h5ad or 10x Matrix Market input.
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Install path and repo signals
Repo path
skills/scrna-orchestrator/
License
MIT
Downloads
0
Updated
3/13/2026
FAQ
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